Package: imsig 1.1.3

imsig: Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours

Estimate the relative abundance of tissue-infiltrating immune subpopulations abundances using gene expression data.

Authors:Ajit Johnson Nirmal

imsig_1.1.3.tar.gz
imsig_1.1.3.zip(r-4.7-any)imsig_1.1.3.zip(r-4.6-any)imsig_1.1.3.zip(r-4.5-any)
imsig_1.1.3.tgz(r-4.6-any)imsig_1.1.3.tgz(r-4.5-any)
imsig_1.1.3.tar.gz(r-4.7-any)imsig_1.1.3.tar.gz(r-4.6-any)
imsig_1.1.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
imsig/json (API)

# Install 'imsig' in R:
install.packages('imsig', repos = c('https://ajitjohnson.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ajitjohnson/imsig/issues

Datasets:
  • example_cli - Example clinical data file for survival analysis with ImSig
  • example_data - Example transcriptomics data
  • sig - ImSig genes

On CRAN:

Conda:

cancerdeconvolutionimmunetranscriptomics

4.20 score 29 stars 11 scripts 314 downloads 1 mentions 7 exports 26 dependencies

Last updated from:929f5ce9df. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK155
source / vignettesOK185
linux-releaseOK161
macos-releaseOK207
macos-oldrelOK164
windows-develOK106
windows-releaseOK92
windows-oldrelOK93
wasm-releaseOK112

Exports:feature_selectgene_statimsigimsig_survivalplot_abundanceplot_networkplot_survival

Dependencies:clicpp11farverggplot2gluegridExtragtableHiClimRigraphisobandlabelinglatticelifecyclemagrittrMatrixncdf4pkgconfigR6RColorBrewerrlangS7scalessurvivalvctrsviridisLitewithr