Package: imsig 1.1.3

imsig: Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours

Estimate the relative abundance of tissue-infiltrating immune subpopulations abundances using gene expression data.

Authors:Ajit Johnson Nirmal

imsig_1.1.3.tar.gz
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imsig.pdf |imsig.html✨
imsig/json (API)

# Install 'imsig' in R:
install.packages('imsig', repos = c('https://ajitjohnson.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ajitjohnson/imsig/issues

Datasets:
  • example_cli - Example clinical data file for survival analysis with ImSig
  • example_data - Example transcriptomics data
  • sig - ImSig genes

On CRAN:

cancerdeconvolutionimmunetranscriptomics

4.10 score 25 stars 8 scripts 185 downloads 1 mentions 7 exports 34 dependencies

Last updated 4 years agofrom:929f5ce9df. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 11 2024
R-4.5-winOKOct 11 2024
R-4.5-linuxOKOct 11 2024
R-4.4-winOKOct 11 2024
R-4.4-macOKOct 11 2024
R-4.3-winOKOct 11 2024
R-4.3-macOKOct 11 2024

Exports:feature_selectgene_statimsigimsig_survivalplot_abundanceplot_networkplot_survival

Dependencies:clicolorspacecpp11fansifarverggplot2gluegridExtragtableHiClimRigraphisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellncdf4nlmepillarpkgconfigR6RColorBrewerrlangscalessurvivaltibbleutf8vctrsviridisLitewithr