{ "_id": "6a214623cd65a98ecbd2b7d4", "Package": "imsig", "Type": "Package", "Title": "Immune Cell Gene Signatures for Profiling the Microenvironment\nof Solid Tumours", "Version": "1.1.3", "Author": "Ajit Johnson Nirmal", "Maintainer": "Ajit Johnson Nirmal ", "Description": "Estimate the relative abundance of tissue-infiltrating\nimmune subpopulations abundances using gene expression data.", "License": "GPL-3", "URL": "https://github.com/ajitjohnson/imsig/", "BugReports": "https://github.com/ajitjohnson/imsig/issues", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.1.1", "Config/pak/sysreqs": "libglpk-dev libxml2-dev libnetcdf-dev", "Repository": "https://ajitjohnson.r-universe.dev", "Date/Publication": "2021-01-09 03:35:25 UTC", "RemoteUrl": "https://github.com/ajitjohnson/imsig", "RemoteRef": "HEAD", "RemoteSha": "929f5ce9df576b9821c89bee453f16eb30049e05", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-04 09:27:45 UTC", "User": "root" }, "MD5sum": "32bf734d3a285cfddd5d1673ae0f2c72", "_user": "ajitjohnson", "_type": "src", "_file": "imsig_1.1.3.tar.gz", "_fileid": "fed9f685a08f9552c0829ce185adb5313482d555c8cc69356683ca3d55f8d4b7", "_filesize": 378521, "_sha256": "fed9f685a08f9552c0829ce185adb5313482d555c8cc69356683ca3d55f8d4b7", "_created": "2026-06-04T09:27:45.000Z", "_published": "2026-06-04T09:32:19.752Z", "_distro": "noble", "_jobs": [ { "job": 79489629381, "time": 142, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7407927041" }, { "job": 79489629402, "time": 147, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7407928666" }, { "job": 79489629416, "time": 217, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7407942110" }, { "job": 79489629359, "time": 148, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7407920649" }, { "job": 79489109004, "time": 185, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7407875727" }, { "job": 79489629428, "time": 107, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7407914379" }, { "job": 79489629421, "time": 101, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7407911946" }, { "job": 79489629430, "time": 106, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7407913918" }, { "job": 79489629438, "time": 95, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7407910207" } ], "_buildurl": "https://github.com/r-universe/ajitjohnson/actions/runs/26943051595", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/ajitjohnson/imsig", "_commit": { "id": "929f5ce9df576b9821c89bee453f16eb30049e05", "author": "Ajit Johnson Nirmal ", "committer": "Ajit Johnson Nirmal ", "message": "fixing sort.list in lower version of R\n", "time": 1610163325 }, "_maintainer": { "name": "Ajit Johnson Nirmal", "email": "ajitjohnson.n@gmail.com", "login": "ajitjohnson", "twitter": "@ajitjohnson_n", "description": "Cancer Geneticist | Data Scientist", "uuid": 16224960 }, "_registered": true, "_dependencies": [ { "package": "HiClimR", "version": ">= 1.2", "role": "Imports" }, { "package": "RColorBrewer", "version": ">= 1.1", "role": "Imports" }, { "package": "igraph", "version": ">= 1.2", "role": "Imports" }, { "package": "ggplot2", "version": ">= 2.2", "role": "Imports" }, { "package": "gridExtra", "version": ">= 2.3", "role": "Imports" }, { "package": "survival", "version": ">= 2.4", "role": "Imports" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "ajitjohnson", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "cancer", "deconvolution", "immune", "transcriptomics" ], "_stars": 29, "_contributors": [ { "user": "ajitjohnson", "count": 20, "uuid": 16224960 } ], "_userbio": { "uuid": 16224960, "type": "user", "name": "Ajit Johnson Nirmal", "description": "Cancer Geneticist | Data Scientist" }, "_downloads": { "count": 175, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/imsig" }, "_mentions": 1, "_devurl": "https://github.com/ajitjohnson/imsig", "_searchresults": 10, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/imsig.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/ajitjohnson/imsig", "_realowner": "ajitjohnson", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2018-07-05" }, { "version": "1.0.0", "date": "2018-07-10" }, { "version": "1.1.3", "date": "2021-01-10" } ], "_exports": [ "feature_select", "gene_stat", "imsig", "imsig_survival", "plot_abundance", "plot_network", "plot_survival" ], "_datasets": [ { "name": "example_cli", "title": "Example clinical data file for survival analysis with ImSig", "object": "example_cli", "class": [ "data.frame" ], "fields": [ "time", "status" ], "rows": 59, "table": true, "tojson": true }, { "name": "example_data", "title": "Example transcriptomics data", "object": "example_data", "class": [ "data.frame" ], "fields": [ "GSM512479.CEL", "GSM512480.CEL", "GSM512481.CEL", "GSM512482.CEL", "GSM512483.CEL", "GSM512484.CEL", "GSM512485.CEL", "GSM512486.CEL", "GSM512487.CEL", "GSM512488.CEL", "GSM512489.CEL", "GSM512490.CEL", "GSM512491.CEL", "GSM512492.CEL", "GSM512493.CEL", "GSM512494.CEL", "GSM512495.CEL", "GSM512496.CEL", "GSM512497.CEL", "GSM512498.CEL", "GSM512499.CEL", "GSM512500.CEL", "GSM512501.CEL", "GSM512502.CEL", "GSM512503.CEL", "GSM512504.CEL", "GSM512505.CEL", "GSM512506.CEL", "GSM512507.CEL", "GSM512508.CEL", "GSM512509.CEL", "GSM512510.CEL", "GSM512511.CEL", "GSM512512.CEL", "GSM512513.CEL", "GSM512514.CEL", "GSM512515.CEL", "GSM512516.CEL", "GSM512517.CEL", "GSM512518.CEL", "GSM512519.CEL", "GSM512520.CEL", "GSM512521.CEL", "GSM512522.CEL", "GSM512523.CEL", "GSM512524.CEL", "GSM512525.CEL", "GSM512526.CEL", "GSM512527.CEL", "GSM512528.CEL", "GSM512529.CEL", "GSM512530.CEL", "GSM512531.CEL", "GSM512532.CEL", "GSM512533.CEL", "GSM512534.CEL", "GSM512535.CEL", "GSM512536.CEL", "GSM512537.CEL", "GSM512538.CEL" ], "rows": 568, "table": true, "tojson": true }, { "name": "sig", "title": "ImSig genes", "object": "sig", "class": [ "data.frame" ], "fields": [ "gene", "cell" ], "rows": 569, "table": true, "tojson": true } ], "_help": [ { "page": "corr_matrix", "title": "Correlation matrix", "topics": [ "corr_matrix" ] }, { "page": "example_cli", "title": "Example clinical data file for survival analysis with ImSig", "topics": [ "example_cli" ] }, { "page": "example_data", "title": "Example transcriptomics data", "topics": [ "example_data" ] }, { "page": "feature_select", "title": "Feature selection of signature genes", "topics": [ "feature_select" ] }, { "page": "gene_stat", "title": "General stastitics of ImSig analysis", "topics": [ "gene_stat" ] }, { "page": "imsig", "title": "Estimate the relative abundance of tissue-infiltrating immune subpopulations abundances using gene expression data", "topics": [ "imsig" ] }, { "page": "imsig_survival", "title": "Survival analysis based on relative abundance of immune infiltration estimated by ImSig", "topics": [ "imsig_survival" ] }, { "page": "plot_abundance", "title": "Plot relative abundance of immune cells", "topics": [ "plot_abundance" ] }, { "page": "plot_network", "title": "Network graph of ImSig genes", "topics": [ "plot_network" ] }, { "page": "plot_survival", "title": "Forest plot of survial analysis by ImSig", "topics": [ "plot_survival" ] }, { "page": "pp_exp", "title": "Pre-processing expression matrix", "topics": [ "pp_exp" ] }, { "page": "pp_sig", "title": "Pre-processing ImSig file", "topics": [ "pp_sig" ] }, { "page": "sig", "title": "ImSig genes", "topics": [ "sig" ] } ], "_readme": "https://github.com/ajitjohnson/imsig/raw/HEAD/README.md", "_rundeps": [ "cli", "cpp11", "farver", "ggplot2", "glue", "gridExtra", "gtable", "HiClimR", "igraph", "isoband", "labeling", "lattice", "lifecycle", "magrittr", "Matrix", "ncdf4", "pkgconfig", "R6", "RColorBrewer", "rlang", "S7", "scales", "survival", "vctrs", "viridisLite", "withr" ], "_score": 4.161368002234975, "_indexed": true, "_nocasepkg": "imsig", "_universes": [ "ajitjohnson" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.3", "date": "2026-06-04T09:29:49.000Z", "distro": "noble", "commit": "929f5ce9df576b9821c89bee453f16eb30049e05", "fileid": "3406974ca8977f6310aa5f850bff2baf826d461222f19a2de988d79f3f7ccac5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ajitjohnson/actions/runs/26943051595" }, { "r": "4.6.0", "os": "linux", "version": "1.1.3", "date": "2026-06-04T09:29:53.000Z", "distro": "noble", "commit": "929f5ce9df576b9821c89bee453f16eb30049e05", "fileid": "cb0e9ad9104596ea0487921894a6435933d9f27db5aede8239099dcefc6311fa", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ajitjohnson/actions/runs/26943051595" }, { "r": "4.5.3", "os": "mac", "version": "1.1.3", "date": "2026-06-04T09:30:35.000Z", "commit": "929f5ce9df576b9821c89bee453f16eb30049e05", "fileid": "6214cda2f8dc40bc9af37764b311eb87fa30f774b527160f3be9272ac04de4ff", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ajitjohnson/actions/runs/26943051595" }, { "r": "4.6.0", "os": "mac", "version": "1.1.3", "date": "2026-06-04T09:29:43.000Z", "commit": "929f5ce9df576b9821c89bee453f16eb30049e05", "fileid": "1bfc4c8c5ba113e3a9a138bce382fb54b690f64e3a38469e0f961a641a7007cf", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ajitjohnson/actions/runs/26943051595" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.3", "date": "2026-06-04T09:29:54.000Z", "commit": "929f5ce9df576b9821c89bee453f16eb30049e05", "fileid": "3bfc5afd8dba47f9bbb555b21a1414834a39864049777265837573520cccaef3", "status": "success", "buildurl": "https://github.com/r-universe/ajitjohnson/actions/runs/26943051595" }, { "r": "4.7.0", "os": "win", "version": "1.1.3", "date": "2026-06-04T09:29:03.000Z", "commit": "929f5ce9df576b9821c89bee453f16eb30049e05", "fileid": "975b92723d47ba6bfbc95c8d3db527f71a3a8cdc075b91ff1789cc399279e0a7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ajitjohnson/actions/runs/26943051595" }, { "r": "4.5.3", "os": "win", "version": "1.1.3", "date": "2026-06-04T09:29:14.000Z", "commit": "929f5ce9df576b9821c89bee453f16eb30049e05", "fileid": "89109adf20d57353e6b3e17e467ec451ee3e9835c360f9ec3d13a0573adcf942", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ajitjohnson/actions/runs/26943051595" }, { "r": "4.6.0", "os": "win", "version": "1.1.3", "date": "2026-06-04T09:28:56.000Z", "commit": "929f5ce9df576b9821c89bee453f16eb30049e05", "fileid": "078f19c328814b50f6aed1aeae50b8d26eb6e13e1d573025c9637b41cac5cf56", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ajitjohnson/actions/runs/26943051595" } ] }